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  • 1. Introduction
  • 2. The command line interface
  • 3. Tool installation
  • 4. Quality control
  • 5. Genome assembly
  • 6. Snakemake - automation and reproducibility
  • 7. Read mapping
  • 8. Taxonomic investigation
  • 9. Variant calling
  • 10. Genome annotation
  • 11. Variants-of-interest
  • 12. Orthology and Phylogeny
  • 13. Quick command reference
  • 14. Downloads
Genomics Tutorial
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© Copyright 2016-2021, Sebastian Schmeier (https://sschmeier.com) and Olin Silander (https://www.silanderlab.com). Revision b7cc2732. Last updated on May 16, 2021.

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